PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.1242s0001.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 154aa    MW: 18236 Da    PI: 8.69
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.1242s0001.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.8e-1932118799
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          + ++++s+ l +pkkfa ++ +k   + t++l+ ++g  W+vk+   k+++ ++ltkGW +Fv ++ L+e D +vF+ +g+s+f   v++
  Kalax.1242s0001.2.p  32 QIMANSSSELKVPKKFAMKFPMK--LGETIKLRGPTGDIWRVKV--VKTDEDVLLTKGWPRFVYDHLLNEYDLLVFRCTGSSSF--DVSI 115
                          4557788889*******999877..7779***************..*******************************9998999..9999 PP

                          E-S CS
                   B3  97 frk 99 
                          f++
  Kalax.1242s0001.2.p 116 FDR 118
                          998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-2522121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2423121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.52126119IPR003340B3 DNA binding domain
CDDcd100178.22E-1728117No hitNo description
SMARTSM010198.7E-1430119IPR003340B3 DNA binding domain
PfamPF023623.4E-1632119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAQMDEREET SRVMEEQIYW NQFESTKHHF FQIMANSSSE LKVPKKFAMK FPMKLGETIK  60
LRGPTGDIWR VKVVKTDEDV LLTKGWPRFV YDHLLNEYDL LVFRCTGSSS FDVSIFDRNA  120
CVKDLRMLQD RFESKPHFFK VMNQEFRSKL ASY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-18B3 family protein